HP denied liability in agreeing to settle with Checker, whose given name is Ernest Evans, but agreed not to make future use of his stage name, likeness or related trademarks.
The settlement was disclosed in a Tuesday filing with the San Francisco federal court. Other terms remain confidential. It is unclear whether money changed hands.
Checker, 72, is best known for his 1960 song "The Twist," a No. 1 hit on Billboard magazine's Hot 100 that inspired an international dance craze.
In his February 2013 lawsuit against HP and its Palm unit, the singer objected to HP having in October 2006 begun online sales of "The Chubby Checker" app, which purported to let women estimate the size of a man's genitals based on his shoe size.
A federal judge last August let Checker pursue part of his case, saying one might infer that HP should have known that "the owner of the Chubby Checker mark would never have consented to license the mark for such a vulgar purpose."
HP spokeswoman Sarah Pompei on Friday declined to elaborate on the settlement.
The Palo Alto, California-based company has said it did not create the app and that it was removed in September 2012.
Checker's lawyer Michael Santucci said the matter was resolved "to the mutual satisfaction of all parties."Get your daily dose of tech news, reviews, and insights, in under 80 characters on Gadgets 360 Turbo. Connect with fellow tech lovers on our Forum. Follow us on X, Facebook, WhatsApp, Threads and Google News for instant updates. Catch all the action on our YouTube channel.